update file list according to the new source directory structure

benchmarks/bms/pmd/data/pmd/missings

+pmd/net/sourceforge/pmd/ast/AccessNodeInterface.java
+pmd/net/sourceforge/pmd/ast/CompilationUnit.java
+pmd/net/sourceforge/pmd/ast/SimpleJavaAccessNode.java
+pmd/net/sourceforge/pmd/ast/SimpleJavaAccessTypeNode.java
+pmd/net/sourceforge/pmd/ast/SimpleJavaNode.java
+pmd/net/sourceforge/pmd/ast/SimpleJavaTypeNode.java
+pmd/net/sourceforge/pmd/ast/SimpleNode.java
+pmd/net/sourceforge/pmd/CommandLineOptions.java
+pmd/net/sourceforge/pmd/CommonAbstractRule.java
+pmd/net/sourceforge/pmd/cpd/cppast/CPPParserConstants.java
+pmd/net/sourceforge/pmd/cpd/cppast/CPPParserTokenManager.java
+pmd/net/sourceforge/pmd/cpd/SourceFileOrDirectoryFilter.java
+pmd/net/sourceforge/pmd/dfa/DaaRule.java
+pmd/net/sourceforge/pmd/dfa/IDataFlowNode.java
+pmd/net/sourceforge/pmd/ExternalRuleID.java
+pmd/net/sourceforge/pmd/IRuleViolation.java
+pmd/net/sourceforge/pmd/jsp/ast/JspCharStream.java
+pmd/net/sourceforge/pmd/jsp/ast/SimpleNode.java
+pmd/net/sourceforge/pmd/jsp/rules/DuplicateJspImports.java
+pmd/net/sourceforge/pmd/jsp/rules/NoInlineStyleInformation.java
+pmd/net/sourceforge/pmd/parsers/JspParser.java
+pmd/net/sourceforge/pmd/properties/AbstractPMDProperty.java
+pmd/net/sourceforge/pmd/quickfix/Fix.java
+pmd/net/sourceforge/pmd/renderers/OnTheFlyRenderer.java
+pmd/net/sourceforge/pmd/renderers/PapariTextRenderer.java
+pmd/net/sourceforge/pmd/rules/AccessorClassGeneration.java
+pmd/net/sourceforge/pmd/rules/AssignmentInOperand.java
+pmd/net/sourceforge/pmd/rules/AvoidCallingFinalize.java
+pmd/net/sourceforge/pmd/rules/AvoidFieldNameMatchingMethodName.java
+pmd/net/sourceforge/pmd/rules/AvoidFieldNameMatchingTypeName.java
+pmd/net/sourceforge/pmd/rules/AvoidNonConstructorMethodsWithClassName.java
+pmd/net/sourceforge/pmd/rules/AvoidReassigningParameters.java
+pmd/net/sourceforge/pmd/rules/basic/AvoidMultipleUnaryOperators.java
+pmd/net/sourceforge/pmd/rules/basic/AvoidUsingHardCodedIP.java
+pmd/net/sourceforge/pmd/rules/basic/AvoidUsingOctalValues.java
+pmd/net/sourceforge/pmd/rules/basic/BigIntegerInstantiation.java
+pmd/net/sourceforge/pmd/rules/basic/BooleanInstantiation.java
+pmd/net/sourceforge/pmd/rules/basic/BrokenNullCheck.java
+pmd/net/sourceforge/pmd/rules/basic/UnnecessaryReturn.java
+pmd/net/sourceforge/pmd/rules/ClassNamingConventions.java
+pmd/net/sourceforge/pmd/rules/CloseResource.java
+pmd/net/sourceforge/pmd/rules/codesize/AbstractNcssCount.java
+pmd/net/sourceforge/pmd/rules/codesize/NcssConstructorCount.java
+pmd/net/sourceforge/pmd/rules/codesize/NcssMethodCount.java
+pmd/net/sourceforge/pmd/rules/codesize/NcssTypeCount.java
+pmd/net/sourceforge/pmd/rules/ConstructorCallsOverridableMethod.java
+pmd/net/sourceforge/pmd/rules/CouplingBetweenObjects.java
+pmd/net/sourceforge/pmd/rules/CyclomaticComplexity.java
+pmd/net/sourceforge/pmd/rules/design/AssignmentToNonFinalStatic.java
+pmd/net/sourceforge/pmd/rules/design/CompareObjectsWithEquals.java
+pmd/net/sourceforge/pmd/rules/design/ConfusingTernary.java
+pmd/net/sourceforge/pmd/rules/design/ExceptionAsFlowControl.java
+pmd/net/sourceforge/pmd/rules/design/ImmutableField.java
+pmd/net/sourceforge/pmd/rules/design/LongClassRule.java
+pmd/net/sourceforge/pmd/rules/design/LongMethodRule.java
+pmd/net/sourceforge/pmd/rules/design/LongParameterListRule.java
+pmd/net/sourceforge/pmd/rules/design/NonThreadSafeSingleton.java
+pmd/net/sourceforge/pmd/rules/design/NpathComplexity.java
+pmd/net/sourceforge/pmd/rules/design/PreserveStackTrace.java
+pmd/net/sourceforge/pmd/rules/design/SingularField.java
+pmd/net/sourceforge/pmd/rules/design/TooManyFields.java
+pmd/net/sourceforge/pmd/rules/design/UnnecessaryLocalBeforeReturn.java
+pmd/net/sourceforge/pmd/rules/design/UnsynchronizedStaticDateFormatter.java
+pmd/net/sourceforge/pmd/rules/design/UseCollectionIsEmpty.java
+pmd/net/sourceforge/pmd/rules/design/UseSingleton.java
+pmd/net/sourceforge/pmd/rules/DoubleCheckedLocking.java
+pmd/net/sourceforge/pmd/rules/ExcessiveImports.java
+pmd/net/sourceforge/pmd/rules/ExcessivePublicCount.java
+pmd/net/sourceforge/pmd/rules/IdempotentOperations.java
+pmd/net/sourceforge/pmd/rules/imports/DontImportJavaLang.java
+pmd/net/sourceforge/pmd/rules/imports/DontImportSun.java
+pmd/net/sourceforge/pmd/rules/junit/JUnitAssertionsShouldIncludeMessage.java
+pmd/net/sourceforge/pmd/rules/junit/JUnitTestsShouldContainAsserts.java
+pmd/net/sourceforge/pmd/rules/junit/TestClassWithoutTestCases.java
+pmd/net/sourceforge/pmd/rules/MethodNamingConventions.java
+pmd/net/sourceforge/pmd/rules/MethodWithSameNameAsEnclosingClass.java
+pmd/net/sourceforge/pmd/rules/migration/JUnitUseExpected.java
+pmd/net/sourceforge/pmd/rules/migration/UnnecessaryCast.java
+pmd/net/sourceforge/pmd/rules/MoreThanOneLogger.java
+pmd/net/sourceforge/pmd/rules/naming/AvoidDollarSigns.java
+pmd/net/sourceforge/pmd/rules/naming/SuspiciousHashcodeMethodName.java
+pmd/net/sourceforge/pmd/rules/optimization/AvoidInstantiatingObjectsInLoops.java
+pmd/net/sourceforge/pmd/rules/optimization/LocalVariableCouldBeFinal.java
+pmd/net/sourceforge/pmd/rules/optimization/MethodArgumentCouldBeFinal.java
+pmd/net/sourceforge/pmd/rules/optimization/UnnecessaryWrapperObjectCreation.java
+pmd/net/sourceforge/pmd/rules/optimization/UseStringBufferForStringAppends.java
+pmd/net/sourceforge/pmd/rules/OverrideBothEqualsAndHashcode.java
+pmd/net/sourceforge/pmd/rules/SimplifyBooleanReturns.java
+pmd/net/sourceforge/pmd/rules/strictexception/AvoidCatchingThrowable.java
+pmd/net/sourceforge/pmd/rules/strictexception/ExceptionSignatureDeclaration.java
+pmd/net/sourceforge/pmd/rules/strings/AppendCharacterWithChar.java
+pmd/net/sourceforge/pmd/rules/strings/ConsecutiveLiteralAppends.java
+pmd/net/sourceforge/pmd/rules/strings/InefficientEmptyStringCheck.java
+pmd/net/sourceforge/pmd/rules/strings/InefficientStringBuffering.java
+pmd/net/sourceforge/pmd/rules/strings/InsufficientStringBufferDeclaration.java
+pmd/net/sourceforge/pmd/rules/strings/StringInstantiation.java
+pmd/net/sourceforge/pmd/rules/strings/UnnecessaryCaseChange.java
+pmd/net/sourceforge/pmd/rules/strings/UseIndexOfChar.java
+pmd/net/sourceforge/pmd/rules/strings/UselessStringValueOf.java
+pmd/net/sourceforge/pmd/rules/strings/UseStringBufferLength.java
+pmd/net/sourceforge/pmd/rules/sunsecure/ArrayIsStoredDirectly.java
+pmd/net/sourceforge/pmd/rules/sunsecure/MethodReturnsInternalArray.java
+pmd/net/sourceforge/pmd/rules/SuspiciousOctalEscape.java
+pmd/net/sourceforge/pmd/rules/UnnecessaryConversionTemporary.java
+pmd/net/sourceforge/pmd/rules/UnusedModifier.java
+pmd/net/sourceforge/pmd/rules/UselessOperationOnImmutable.java
+pmd/net/sourceforge/pmd/rules/UselessOverridingMethod.java
+pmd/net/sourceforge/pmd/rules/VariableNamingConventions.java
+pmd/net/sourceforge/pmd/SimpleRuleSetNameMapper.java
+pmd/net/sourceforge/pmd/SourceFileConstants.java
+pmd/net/sourceforge/pmd/SourceFileSelector.java
+pmd/net/sourceforge/pmd/SourceType.java
+pmd/net/sourceforge/pmd/SourceTypeDiscoverer.java
+pmd/net/sourceforge/pmd/sourcetypehandlers/JavaTypeHandler.java
+pmd/net/sourceforge/pmd/sourcetypehandlers/JspTypeHandler.java
+pmd/net/sourceforge/pmd/sourcetypehandlers/SourceTypeHandler.java
+pmd/net/sourceforge/pmd/sourcetypehandlers/SourceTypeHandlerBroker.java
+pmd/net/sourceforge/pmd/SourceTypeToRuleLanguageMapper.java
+pmd/net/sourceforge/pmd/symboltable/DummyScope.java
+pmd/net/sourceforge/pmd/symboltable/JspScopeAndDeclarationFinder.java
+pmd/net/sourceforge/pmd/symboltable/JspSymbolFacade.java
+pmd/net/sourceforge/pmd/symboltable/VariableUsageFinderFunction.java
+pmd/net/sourceforge/pmd/TargetJDK1_3.java
+pmd/net/sourceforge/pmd/TargetJDK1_4.java
+pmd/net/sourceforge/pmd/TargetJDK1_5.java
+pmd/net/sourceforge/pmd/TargetJDK1_6.java
+pmd/net/sourceforge/pmd/TargetJDK1_7.java
+pmd/net/sourceforge/pmd/TargetJDKVersion.java
+pmd/net/sourceforge/pmd/util/designer/MyPrintStream.java
+pmd/net/sourceforge/pmd/util/SymbolTableViewer.java
+pmd/net/sourceforge/pmd/util/UnaryFunction.java
+pmd/net/sourceforge/pmd/util/XPathTest.java
\ No newline at end of file

benchmarks/bms/pmd/data/pmd/small.lst

-pmd/net/sourceforge/pmd/ast/Token.java
+pmd-vm/target/generated-sources/javacc/net/sourceforge/pmd/lang/vm/ast/Token.java
\ No newline at end of file